Report Type: Expression Report Date: 12:50PM 05/16/2007 ______________________________________________________________________ Filename: Soybean EM SeedCoatHI1.CHP Probe Array Type: Soybean Algorithm: Statistical Probe Pair Thr: 8 Controls: Antisense ______________________________________________________________________ Alpha1: 0.05 Alpha2: 0.065 Tau: 0.015 Noise (RawQ): 2.140 Scale Factor (SF): 5.103 TGT Value: 500 Norm Factor (NF): 1.000 ______________________________________________________________________ Background: Avg: 68.95 Std: 0.72 Min: 66.00 Max: 70.20 Noise: Avg: 3.53 Std: 0.08 Min: 3.30 Max: 3.80 Corner+ Avg: 628 Count: 32 Corner- Avg: 18442 Count: 32 Central- Avg: 18412 Count: 9 ______________________________________________________________________ The following data represents probe sets that exceed the probe pair threshold and are not called "No Call". Total Probe Sets: 61078 Number Present: 19050 31.2% Number Absent: 41179 67.4% Number Marginal: 849 1.4% Average Signal (P): 2688.2 Average Signal (A): 68.2 Average Signal (M): 233.6 Average Signal (All): 887.7 ______________________________________________________________________ Spike Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-BIOB 867.3 P 1314.1 P 1034.1 P 1071.83 1.19 AFFX-BIOC 3232.2 P 2929.7 P 3080.95 0.91 AFFX-BIOD 6006.3 P 12559.9 P 9283.13 2.09 AFFX-CRE 37067.3 P 39824.5 P 38445.88 1.07 AFFX-DAP 44.1 A 44.1 A 3.7 A 30.64 0.08 AFFX-LYS 56.8 A 106.3 A 7.2 A 56.76 0.13 AFFX-PHE 7.0 A 3.7 A 15.2 A 8.63 2.17 AFFX-THR 12.2 A 30.9 A 30.4 A 24.51 2.49 AFFX-TRP 11.9 A 72.9 A 8.2 A 31.02 0.69 AFFX-R2-EC-BIOB 1636.3 P 1743.9 P 1253.5 P 1544.58 0.77 AFFX-R2-EC-BIOC 3906.3 P 4402.4 P 4154.34 1.13 AFFX-R2-EC-BIOD 15956.0 P 22598.9 P 19277.45 1.42 AFFX-R2-P1-CRE 45143.3 P 53355.4 P 49249.35 1.18 AFFX-R2-BS-DAP 5.0 A 15.5 A 7.9 A 9.46 1.58 AFFX-R2-BS-LYS 25.5 A 16.2 A 123.4 A 55.04 4.83 AFFX-R2-BS-PHE 16.5 A 9.8 A 9.6 A 11.96 0.58 AFFX-R2-BS-THR 137.3 A 4.4 A 150.7 A 97.48 1.10 ______________________________________________________________________