Report Type: Expression Report Date: 12:50PM 05/16/2007 ______________________________________________________________________ Filename: Soybean EM SeedCoatHI2.CHP Probe Array Type: Soybean Algorithm: Statistical Probe Pair Thr: 8 Controls: Antisense ______________________________________________________________________ Alpha1: 0.05 Alpha2: 0.065 Tau: 0.015 Noise (RawQ): 1.780 Scale Factor (SF): 7.276 TGT Value: 500 Norm Factor (NF): 1.000 ______________________________________________________________________ Background: Avg: 56.97 Std: 0.74 Min: 54.00 Max: 58.10 Noise: Avg: 2.83 Std: 0.05 Min: 2.70 Max: 3.00 Corner+ Avg: 579 Count: 32 Corner- Avg: 17951 Count: 32 Central- Avg: 17901 Count: 9 ______________________________________________________________________ The following data represents probe sets that exceed the probe pair threshold and are not called "No Call". Total Probe Sets: 61078 Number Present: 18193 29.8% Number Absent: 42086 68.9% Number Marginal: 799 1.3% Average Signal (P): 2968.6 Average Signal (A): 73.9 Average Signal (M): 251.0 Average Signal (All): 938.4 ______________________________________________________________________ Spike Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-BIOB 1346.8 P 2031.7 P 1667.8 P 1682.09 1.24 AFFX-BIOC 4366.8 P 4332.7 P 4349.74 0.99 AFFX-BIOD 8472.5 P 19264.1 P 13868.31 2.27 AFFX-CRE 55112.9 P 58541.3 P 56827.07 1.06 AFFX-DAP 43.3 A 83.8 A 75.0 A 67.35 1.73 AFFX-LYS 7.7 A 61.6 A 12.1 A 27.13 1.56 AFFX-PHE 7.8 A 14.8 A 11.1 A 11.23 1.42 AFFX-THR 6.7 A 52.6 A 70.5 A 43.26 10.47 AFFX-TRP 12.3 A 8.0 A 8.3 A 9.50 0.67 AFFX-R2-EC-BIOB 2400.7 P 2781.9 P 1725.0 P 2302.56 0.72 AFFX-R2-EC-BIOC 5744.1 P 7411.7 P 6577.93 1.29 AFFX-R2-EC-BIOD 23226.8 P 34101.9 P 28664.33 1.47 AFFX-R2-P1-CRE 64570.6 P 76815.4 P 70693.02 1.19 AFFX-R2-BS-DAP 7.7 A 3.5 A 23.5 A 11.54 3.05 AFFX-R2-BS-LYS 43.7 A 48.4 A 79.8 A 57.30 1.82 AFFX-R2-BS-PHE 18.0 A 14.0 A 154.5 A 62.16 8.60 AFFX-R2-BS-THR 109.5 A 12.9 A 94.4 A 72.24 0.86 ______________________________________________________________________