Report Type: Expression Report Date: 10:02PM 05/17/2007 ______________________________________________________________________ Filename: Soybean EM-Coty-AB Parenchyma1.CHP Probe Array Type: Soybean Algorithm: Statistical Probe Pair Thr: 8 Controls: Antisense ______________________________________________________________________ Alpha1: 0.05 Alpha2: 0.065 Tau: 0.015 Noise (RawQ): 2.070 Scale Factor (SF): 5.224 TGT Value: 500 Norm Factor (NF): 1.000 ______________________________________________________________________ Background: Avg: 65.66 Std: 1.18 Min: 63.30 Max: 69.00 Noise: Avg: 3.36 Std: 0.08 Min: 3.20 Max: 3.60 Corner+ Avg: 615 Count: 32 Corner- Avg: 18316 Count: 32 Central- Avg: 17085 Count: 9 ______________________________________________________________________ The following data represents probe sets that exceed the probe pair threshold and are not called "No Call". Total Probe Sets: 61078 Number Present: 18579 30.4% Number Absent: 41765 68.4% Number Marginal: 734 1.2% Average Signal (P): 2871.7 Average Signal (A): 61.1 Average Signal (M): 212.5 Average Signal (All): 917.8 ______________________________________________________________________ Spike Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-BIOB 1130.0 P 1887.7 P 1058.5 P 1358.73 0.94 AFFX-BIOC 3720.3 P 3510.4 P 3615.36 0.94 AFFX-BIOD 6923.1 P 12766.7 P 9844.88 1.84 AFFX-CRE 37849.6 P 41216.7 P 39533.16 1.09 AFFX-DAP 14.7 A 78.5 A 8.3 A 33.84 0.57 AFFX-LYS 8.9 A 60.3 A 3.6 A 24.27 0.41 AFFX-PHE 5.5 A 5.2 A 45.2 A 18.62 8.24 AFFX-THR 7.9 A 10.3 A 28.4 A 15.54 3.58 AFFX-TRP 78.9 A 6.4 A 17.8 A 34.37 0.23 AFFX-R2-EC-BIOB 1887.6 P 2260.6 P 1684.5 P 1944.25 0.89 AFFX-R2-EC-BIOC 4618.0 P 4993.3 P 4805.68 1.08 AFFX-R2-EC-BIOD 17958.3 P 24688.8 P 21323.54 1.37 AFFX-R2-P1-CRE 46152.0 P 53866.2 P 50009.13 1.17 AFFX-R2-BS-DAP 18.7 A 6.7 A 51.1 A 25.50 2.74 AFFX-R2-BS-LYS 4.6 A 9.6 A 80.1 A 31.44 17.31 AFFX-R2-BS-PHE 36.2 A 43.9 A 84.0 A 54.69 2.32 AFFX-R2-BS-THR 19.5 A 76.3 A 11.1 A 35.65 0.57 ______________________________________________________________________