Report Type: Expression Report Date: 01:13PM 08/17/2006 ______________________________________________________________________ Filename: Soybean Hilum 3.CHP Probe Array Type: Soybean Algorithm: Statistical Probe Pair Thr: 8 Controls: Antisense ______________________________________________________________________ Alpha1: 0.05 Alpha2: 0.065 Tau: 0.015 Noise (RawQ): 2.060 Scale Factor (SF): 7.883 TGT Value: 500 Norm Factor (NF): 1.000 ______________________________________________________________________ Background: Avg: 65.17 Std: 1.89 Min: 61.60 Max: 69.50 Noise: Avg: 3.26 Std: 0.07 Min: 3.10 Max: 3.50 Corner+ Avg: 596 Count: 32 Corner- Avg: 18524 Count: 32 Central- Avg: 18752 Count: 9 ______________________________________________________________________ The following data represents probe sets that exceed the probe pair threshold and are not called "No Call". Total Probe Sets: 61078 Number Present: 17809 29.2% Number Absent: 42530 69.6% Number Marginal: 739 1.2% Average Signal (P): 3092.0 Average Signal (A): 67.9 Average Signal (M): 258.9 Average Signal (All): 952.0 ______________________________________________________________________ Spike Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-BIOB 1930.5 P 3384.4 P 2253.7 P 2522.90 1.17 AFFX-BIOC 6519.3 P 5315.3 P 5917.31 0.82 AFFX-BIOD 13318.7 P 25861.2 P 19589.96 1.94 AFFX-CRE 64984.1 P 73698.1 P 69341.09 1.13 AFFX-DAP 84.4 A 79.2 A 14.0 A 59.20 0.17 AFFX-LYS 46.7 A 16.5 A 4.2 A 22.49 0.09 AFFX-PHE 6.5 A 28.8 A 13.1 A 16.12 2.00 AFFX-THR 9.7 A 27.4 A 38.2 A 25.08 3.95 AFFX-TRP 89.5 A 6.0 A 8.4 A 34.67 0.09 AFFX-R2-EC-BIOB 3361.2 P 3678.4 P 3201.7 P 3413.77 0.95 AFFX-R2-EC-BIOC 8217.9 P 7195.3 P 7706.61 0.88 AFFX-R2-EC-BIOD 38792.5 P 45725.6 P 42259.09 1.18 AFFX-R2-P1-CRE 78670.2 P 101298.7 P 89984.42 1.29 AFFX-R2-BS-DAP 12.1 A 34.5 A 25.5 A 24.04 2.10 AFFX-R2-BS-LYS 71.3 A 4.0 A 60.6 A 45.28 0.85 AFFX-R2-BS-PHE 90.3 A 6.2 A 14.6 A 37.05 0.16 AFFX-R2-BS-THR 16.7 A 9.3 A 9.1 A 11.72 0.55 ______________________________________________________________________