Report Type: Expression Report Date: 10:03PM 05/17/2007 ______________________________________________________________________ Filename: Soybean EM-Coty-AD Parenchyma1.CHP Probe Array Type: Soybean Algorithm: Statistical Probe Pair Thr: 8 Controls: Antisense ______________________________________________________________________ Alpha1: 0.05 Alpha2: 0.065 Tau: 0.015 Noise (RawQ): 1.750 Scale Factor (SF): 7.205 TGT Value: 500 Norm Factor (NF): 1.000 ______________________________________________________________________ Background: Avg: 60.16 Std: 0.53 Min: 58.30 Max: 61.40 Noise: Avg: 2.57 Std: 0.06 Min: 2.40 Max: 2.70 Corner+ Avg: 379 Count: 32 Corner- Avg: 11938 Count: 32 Central- Avg: 12027 Count: 9 ______________________________________________________________________ The following data represents probe sets that exceed the probe pair threshold and are not called "No Call". Total Probe Sets: 61078 Number Present: 18024 29.5% Number Absent: 42337 69.3% Number Marginal: 717 1.2% Average Signal (P): 2985.3 Average Signal (A): 62.9 Average Signal (M): 251.8 Average Signal (All): 927.5 ______________________________________________________________________ Spike Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-BIOB 982.9 P 1791.6 P 1035.5 P 1269.97 1.05 AFFX-BIOC 3195.2 P 2771.2 P 2983.21 0.87 AFFX-BIOD 6191.5 P 11556.1 P 8873.81 1.87 AFFX-CRE 38218.7 P 43029.1 P 40623.92 1.13 AFFX-DAP 51.5 A 46.5 A 11.3 A 36.44 0.22 AFFX-LYS 6.1 A 21.5 A 3.4 A 10.32 0.55 AFFX-PHE 5.9 A 10.0 A 26.9 A 14.26 4.52 AFFX-THR 13.6 A 4.2 A 31.1 A 16.30 2.28 AFFX-TRP 4.1 A 50.1 A 24.5 A 26.23 5.91 AFFX-R2-EC-BIOB 1959.2 P 1953.6 P 1597.5 P 1836.79 0.82 AFFX-R2-EC-BIOC 4318.6 P 5010.4 P 4664.51 1.16 AFFX-R2-EC-BIOD 17391.7 P 22463.0 P 19927.36 1.29 AFFX-R2-P1-CRE 47203.5 P 53662.6 P 50433.04 1.14 AFFX-R2-BS-DAP 10.2 A 2.5 A 7.3 A 6.69 0.72 AFFX-R2-BS-LYS 6.8 A 19.7 A 92.6 P 39.67 13.69 AFFX-R2-BS-PHE 6.5 A 13.7 A 15.0 A 11.71 2.32 AFFX-R2-BS-THR 3.8 A 94.1 A 72.4 A 56.76 18.82 ______________________________________________________________________