Report Type: Expression Report Date: 10:16AM 04/22/2007 ______________________________________________________________________ Filename: Arabidopsis EP5.CHP Probe Array Type: ATH1-121501 Algorithm: Statistical Probe Pair Thr: 8 Controls: Antisense ______________________________________________________________________ Alpha1: 0.05 Alpha2: 0.065 Tau: 0.015 Noise (RawQ): 0.920 Scale Factor (SF): 23.635 TGT Value: 500 Norm Factor (NF): 1.000 ______________________________________________________________________ Background: Avg: 29.12 Std: 0.29 Min: 28.50 Max: 30.00 Noise: Avg: 0.76 Std: 0.03 Min: 0.60 Max: 0.80 Corner+ Avg: 105 Count: 32 Corner- Avg: 7394 Count: 32 Central- Avg: 5564 Count: 9 ______________________________________________________________________ The following data represents probe sets that exceed the probe pair threshold and are not called "No Call". Total Probe Sets: 22810 Number Present: 10568 46.3% Number Absent: 11908 52.2% Number Marginal: 334 1.5% Average Signal (P): 1799.3 Average Signal (A): 50.4 Average Signal (M): 179.9 Average Signal (All): 862.6 ______________________________________________________________________ Housekeeping Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-R2-AT-ACTIN 17494.7 P 1181.7 P 9123.8 P 9266.75 0.52 AFFX-R2-AT-GAPDH 5194.4 P 7523.4 P 6358.88 1.45 AFFX-R2-AT-UBQ 885.9 P 8735.1 P 4810.53 9.86 AFFX-ATHAL-ACTIN 413.3 P 1049.5 P 5189.3 P 2217.37 12.56 AFFX-ATHAL-GAPDH 1653.9 P 4109.5 P 13855.5 P 6539.61 8.38 AFFX-ATHAL-UBQ 872.0 P 1625.8 P 8247.9 P 3581.92 9.46 ______________________________________________________________________ Spike Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-BIOB 7156.3 P 12168.3 P 10506.9 P 9943.85 1.47 AFFX-BIOC 24413.4 P 13737.6 P 19075.54 0.56 AFFX-BIOD 38760.5 P 67457.4 P 53108.95 1.74 AFFX-CRE 136924.3 P 202766.9 P 169845.59 1.48 AFFX-DAP 64.6 A 8.7 A 10.2 A 27.82 0.16 AFFX-LYS 32.5 A 4.7 A 3.7 A 13.66 0.11 AFFX-PHE 7.1 A 6.0 A 54.9 A 22.66 7.75 AFFX-THR 31.2 A 26.5 A 81.9 A 46.56 2.62 AFFX-TRP 10.1 A 8.1 A 8.4 A 8.89 0.83 AFFX-R2-EC-BIOB 9497.5 P 11347.8 P 9813.7 P 10219.68 1.03 AFFX-R2-EC-BIOC 30840.4 P 28426.0 P 29633.16 0.92 AFFX-R2-EC-BIOD 62297.4 P 80021.2 P 71159.30 1.28 AFFX-R2-P1-CRE 164986.6 P 155577.0 P 160281.81 0.94 AFFX-R2-BS-DAP 1.9 A 32.5 A 48.1 A 27.51 25.00 AFFX-R2-BS-LYS 40.4 A 2.7 A 141.3 A 61.47 3.49 AFFX-R2-BS-PHE 30.2 A 42.5 A 4.5 A 25.76 0.15 AFFX-R2-BS-THR 7.2 A 44.8 A 32.8 A 28.30 4.53 ______________________________________________________________________