Report Type: Expression Report Date: 03:30PM 02/21/2008 ______________________________________________________________________ Filename: Arabidopsis GMPE1.CHP Probe Array Type: ATH1-121501 Algorithm: Statistical Probe Pair Thr: 8 Controls: Antisense ______________________________________________________________________ Alpha1: 0.05 Alpha2: 0.065 Tau: 0.015 Noise (RawQ): 0.790 Scale Factor (SF): 41.107 TGT Value: 500 Norm Factor (NF): 1.000 ______________________________________________________________________ Background: Avg: 26.25 Std: 0.18 Min: 25.90 Max: 27.00 Noise: Avg: 0.76 Std: 0.02 Min: 0.70 Max: 0.80 Corner+ Avg: 48 Count: 32 Corner- Avg: 15820 Count: 32 Central- Avg: 14904 Count: 9 ______________________________________________________________________ The following data represents probe sets that exceed the probe pair threshold and are not called "No Call". Total Probe Sets: 22810 Number Present: 7879 34.5% Number Absent: 14561 63.8% Number Marginal: 370 1.6% Average Signal (P): 2791.1 Average Signal (A): 81.9 Average Signal (M): 279.4 Average Signal (All): 1020.9 ______________________________________________________________________ Housekeeping Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-R2-AT-ACTIN 13375.6 P 414.4 P 3102.8 P 5630.94 0.23 AFFX-R2-AT-GAPDH 3952.0 P 5827.5 P 4889.70 1.47 AFFX-R2-AT-UBQ 2465.4 P 11763.5 P 7114.46 4.77 AFFX-ATHAL-ACTIN 232.9 P 143.7 A 2767.3 P 1047.98 11.88 AFFX-ATHAL-GAPDH 869.3 P 4273.8 P 19706.8 P 8283.31 22.67 AFFX-ATHAL-UBQ 1438.8 P 3708.8 P 19547.4 P 8231.70 13.59 ______________________________________________________________________ Spike Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-BIOB 11750.2 P 23767.9 P 18659.7 P 18059.25 1.59 AFFX-BIOC 41952.1 P 24522.5 P 33237.30 0.58 AFFX-BIOD 54504.9 P 131532.5 P 93018.68 2.41 AFFX-CRE 265509.7 P 331609.9 P 298559.81 1.25 AFFX-DAP 52.6 A 10.1 A 13.8 A 25.49 0.26 AFFX-LYS 124.5 A 89.6 A 18.4 A 77.49 0.15 AFFX-PHE 81.6 A 4.8 A 17.9 A 34.74 0.22 AFFX-THR 15.5 A 17.7 A 49.3 A 27.49 3.17 AFFX-TRP 124.9 A 12.3 A 27.9 A 55.02 0.22 AFFX-R2-EC-BIOB 17686.7 P 21859.5 P 20742.2 P 20096.15 1.17 AFFX-R2-EC-BIOC 50808.5 P 42985.9 P 46897.16 0.85 AFFX-R2-EC-BIOD 127206.8 P 159638.5 P 143422.66 1.25 AFFX-R2-P1-CRE 320375.0 P 348173.0 P 334274.00 1.09 AFFX-R2-BS-DAP 20.3 A 75.6 A 6.2 A 34.07 0.31 AFFX-R2-BS-LYS 75.4 A 20.4 A 143.6 A 79.83 1.90 AFFX-R2-BS-PHE 3.9 A 3.7 A 16.2 A 7.93 4.19 AFFX-R2-BS-THR 11.1 A 6.4 A 11.0 A 9.51 0.99 ______________________________________________________________________