Report Type: Expression Report Date: 05:59PM 03/20/2008 ______________________________________________________________________ Filename: Arabidopsis GSUS4b.CHP Probe Array Type: ATH1-121501 Algorithm: Statistical Probe Pair Thr: 8 Controls: Antisense ______________________________________________________________________ Alpha1: 0.05 Alpha2: 0.065 Tau: 0.015 Noise (RawQ): 0.810 Scale Factor (SF): 13.424 TGT Value: 500 Norm Factor (NF): 1.000 ______________________________________________________________________ Background: Avg: 27.34 Std: 0.06 Min: 27.10 Max: 27.50 Noise: Avg: 0.77 Std: 0.02 Min: 0.70 Max: 0.80 Corner+ Avg: 35 Count: 32 Corner- Avg: 8322 Count: 32 Central- Avg: 6548 Count: 9 ______________________________________________________________________ The following data represents probe sets that exceed the probe pair threshold and are not called "No Call". Total Probe Sets: 22810 Number Present: 13001 57.0% Number Absent: 9543 41.8% Number Marginal: 266 1.2% Average Signal (P): 1276.9 Average Signal (A): 26.2 Average Signal (M): 90.4 Average Signal (All): 739.8 ______________________________________________________________________ Housekeeping Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-R2-AT-ACTIN 4589.5 P 1278.7 P 9169.3 P 5012.52 2.00 AFFX-R2-AT-GAPDH 7526.0 P 14829.8 P 11177.90 1.97 AFFX-R2-AT-UBQ 1889.4 P 16789.2 P 9339.28 8.89 AFFX-ATHAL-ACTIN 211.0 P 650.8 P 3814.1 P 1558.67 18.07 AFFX-ATHAL-GAPDH 2790.9 P 7535.1 P 15208.1 P 8511.38 5.45 AFFX-ATHAL-UBQ 943.9 P 2832.6 P 18107.3 P 7294.61 19.18 ______________________________________________________________________ Spike Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-BIOB 4568.2 P 7852.7 P 6299.2 P 6240.04 1.38 AFFX-BIOC 15774.3 P 9860.4 P 12817.39 0.63 AFFX-BIOD 23803.9 P 41661.5 P 32732.71 1.75 AFFX-CRE 75208.9 P 100441.9 P 87825.42 1.34 AFFX-DAP 57.5 A 21.3 A 2.6 A 27.15 0.05 AFFX-LYS 3.5 A 6.3 A 9.2 A 6.35 2.61 AFFX-PHE 5.5 A 1.1 A 52.4 A 19.67 9.52 AFFX-THR 25.8 A 10.3 A 17.8 A 17.98 0.69 AFFX-TRP 15.0 A 3.0 A 33.0 A 16.98 2.20 AFFX-R2-EC-BIOB 7707.5 P 7621.0 P 8194.5 P 7841.02 1.06 AFFX-R2-EC-BIOC 21029.0 P 24251.2 P 22640.13 1.15 AFFX-R2-EC-BIOD 42462.5 P 49568.7 P 46015.63 1.17 AFFX-R2-P1-CRE 105456.4 P 125471.9 P 115464.13 1.19 AFFX-R2-BS-DAP 1.1 A 4.3 A 25.5 A 10.29 22.56 AFFX-R2-BS-LYS 18.9 A 18.7 A 26.8 A 21.49 1.41 AFFX-R2-BS-PHE 2.5 A 40.2 A 12.8 A 18.50 5.08 AFFX-R2-BS-THR 20.0 A 5.6 A 37.5 A 21.03 1.87 ______________________________________________________________________