Report Type: Expression Report Date: 10:16AM 04/22/2007 ______________________________________________________________________ Filename: Arabidopsis CE1.CHP Probe Array Type: ATH1-121501 Algorithm: Statistical Probe Pair Thr: 8 Controls: Antisense ______________________________________________________________________ Alpha1: 0.05 Alpha2: 0.065 Tau: 0.015 Noise (RawQ): 0.860 Scale Factor (SF): 37.448 TGT Value: 500 Norm Factor (NF): 1.000 ______________________________________________________________________ Background: Avg: 27.72 Std: 0.17 Min: 27.30 Max: 28.20 Noise: Avg: 0.68 Std: 0.02 Min: 0.60 Max: 0.70 Corner+ Avg: 101 Count: 32 Corner- Avg: 7062 Count: 32 Central- Avg: 6723 Count: 9 ______________________________________________________________________ The following data represents probe sets that exceed the probe pair threshold and are not called "No Call". Total Probe Sets: 22810 Number Present: 7745 34.0% Number Absent: 14699 64.4% Number Marginal: 366 1.6% Average Signal (P): 2755.9 Average Signal (A): 67.4 Average Signal (M): 236.3 Average Signal (All): 983.0 ______________________________________________________________________ Housekeeping Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-R2-AT-ACTIN 3468.8 P 546.2 P 4599.1 P 2871.38 1.33 AFFX-R2-AT-GAPDH 2868.5 P 4187.0 P 3527.74 1.46 AFFX-R2-AT-UBQ 4569.4 P 15776.2 P 10172.83 3.45 AFFX-ATHAL-ACTIN 176.3 P 443.8 P 2940.2 P 1186.76 16.68 AFFX-ATHAL-GAPDH 339.5 P 2129.5 P 9414.4 P 3961.12 27.73 AFFX-ATHAL-UBQ 2232.0 P 3735.6 P 24595.7 P 10187.74 11.02 ______________________________________________________________________ Spike Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-BIOB 12107.2 P 21292.9 P 15691.1 P 16363.74 1.30 AFFX-BIOC 35636.8 P 21910.2 P 28773.53 0.61 AFFX-BIOD 61466.7 P 105969.6 P 83718.16 1.72 AFFX-CRE 204871.0 P 277243.5 P 241057.28 1.35 AFFX-DAP 116.1 A 9.9 A 4.2 A 43.39 0.04 AFFX-LYS 63.6 A 79.2 A 15.3 A 52.70 0.24 AFFX-PHE 3.5 A 46.0 A 25.3 A 24.92 7.23 AFFX-THR 8.0 A 118.7 A 123.8 A 83.52 15.45 AFFX-TRP 16.3 A 51.9 A 47.5 A 38.55 2.92 AFFX-R2-EC-BIOB 17265.5 P 20667.4 P 19668.8 P 19200.58 1.14 AFFX-R2-EC-BIOC 48525.6 P 49158.3 P 48841.98 1.01 AFFX-R2-EC-BIOD 101306.0 P 120434.8 P 110870.36 1.19 AFFX-R2-P1-CRE 280826.6 P 324677.1 P 302751.88 1.16 AFFX-R2-BS-DAP 17.8 A 57.1 A 7.7 A 27.52 0.43 AFFX-R2-BS-LYS 3.5 A 4.3 A 94.7 M 34.19 27.22 AFFX-R2-BS-PHE 56.9 A 83.7 A 60.0 A 66.88 1.05 AFFX-R2-BS-THR 13.8 A 22.3 A 17.6 A 17.90 1.27 ______________________________________________________________________