Report Type:	Expression Report
Date:          	05:20PM 06/04/2008
______________________________________________________________________

Filename:		Arabidopsis lcGSC3.CHP
Probe Array Type:	ATH1-121501
Algorithm:		Statistical
Probe Pair Thr:	8
Controls:		Antisense
______________________________________________________________________

Alpha1:		0.05
Alpha2:		0.065
Tau:		0.015
Noise (RawQ):	1.120
Scale Factor (SF):	18.685
TGT Value:		500
Norm Factor (NF):	1.000
______________________________________________________________________

Background:
	Avg: 28.80	Std: 0.26	Min: 28.20	Max: 29.60
Noise:
	Avg: 1.00	Std: 0.05	Min: 0.90	Max: 1.10
Corner+
	Avg: 292		Count: 32
Corner-
	Avg: 22205		Count: 32
Central-
	Avg: 19602		Count: 9
______________________________________________________________________

The following data represents probe sets that exceed the probe pair threshold 
and are not called "No Call".

Total Probe Sets:	22810
Number Present:	11896	52.2%
Number Absent:	10582	46.4%
Number Marginal:	332	1.5%

Average Signal (P):	1453.7
Average Signal (A):	55.1
Average Signal (M):	178.1
Average Signal (All):	786.3
______________________________________________________________________

Housekeeping Controls:
Probe Set		Sig(5')	Det(5')	Sig(M')	Det(M')	Sig(3')	Det(3')	Sig(all)	Sig(3'/5')
AFFX-R2-AT-ACTIN	8041.3	P	2139.8	P	12126.1	P	7435.73	1.51
AFFX-R2-AT-GAPDH	4207.8	P	 	 	6403.0	P	5305.37	1.52
AFFX-R2-AT-UBQ	5273.7	P	 	 	24312.8	P	14793.27	4.61
AFFX-ATHAL-ACTIN	442.6	P	831.8	P	5448.0	P	2240.79	12.31
AFFX-ATHAL-GAPDH	1306.1	P	4351.7	P	10099.3	P	5252.37	7.73
AFFX-ATHAL-UBQ	2329.3	P	5760.9	P	24196.5	P	10762.24	10.39
______________________________________________________________________

Spike Controls:
Probe Set		Sig(5')	Det(5')	Sig(M')	Det(M')	Sig(3')	Det(3')	Sig(all)	Sig(3'/5')
AFFX-BIOB		6725.1	P	13534.9	P	13002.3	P	11087.45	1.93
AFFX-BIOC		23202.4	P	 	 	16773.9	P	19988.13	0.72
AFFX-BIOD		33485.0	P	 	 	70290.8	P	51887.88	2.10
AFFX-CRE		150293.4	P	 	 	242238.3	P	196265.84	1.61
AFFX-DAP		37.2	A	16.5	A	10.1	A	21.29	0.27
AFFX-LYS		16.1	A	9.7	A	28.0	A	17.96	1.74
AFFX-PHE		8.4	A	7.9	A	28.5	A	14.92	3.40
AFFX-THR		54.9	A	6.7	A	77.0	A	46.21	1.40
AFFX-TRP		31.6	A	28.4	A	83.3	A	47.78	2.63
AFFX-R2-EC-BIOB	11461.3	P	12316.3	P	12816.8	P	12198.13	1.12
AFFX-R2-EC-BIOC	30924.8	P	 	 	25579.3	P	28252.04	0.83
AFFX-R2-EC-BIOD	73988.6	P	 	 	106732.9	P	90360.75	1.44
AFFX-R2-P1-CRE	176035.7	P	 	 	182034.6	P	179035.16	1.03
AFFX-R2-BS-DAP	45.5	A	60.0	A	2.3	A	35.91	0.05
AFFX-R2-BS-LYS	5.3	A	4.1	A	31.4	A	13.62	5.92
AFFX-R2-BS-PHE	34.2	A	111.3	P	85.5	A	76.99	2.50
AFFX-R2-BS-THR	60.2	A	6.9	A	10.4	A	25.85	0.17
______________________________________________________________________