Report Type: Expression Report Date: 07:23PM 11/14/2007 ______________________________________________________________________ Filename: Arabidopsis LcEP2.CHP Probe Array Type: ATH1-121501 Algorithm: Statistical Probe Pair Thr: 8 Controls: Antisense ______________________________________________________________________ Alpha1: 0.05 Alpha2: 0.065 Tau: 0.015 Noise (RawQ): 1.010 Scale Factor (SF): 8.766 TGT Value: 500 Norm Factor (NF): 1.000 ______________________________________________________________________ Background: Avg: 29.58 Std: 0.27 Min: 29.00 Max: 30.40 Noise: Avg: 0.98 Std: 0.03 Min: 0.90 Max: 1.10 Corner+ Avg: 174 Count: 32 Corner- Avg: 11808 Count: 32 Central- Avg: 9471 Count: 9 ______________________________________________________________________ The following data represents probe sets that exceed the probe pair threshold and are not called "No Call". Total Probe Sets: 22810 Number Present: 13191 57.8% Number Absent: 9329 40.9% Number Marginal: 290 1.3% Average Signal (P): 1299.0 Average Signal (A): 28.5 Average Signal (M): 98.4 Average Signal (All): 764.1 ______________________________________________________________________ Housekeeping Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-R2-AT-ACTIN 7776.2 P 1264.5 P 10149.5 P 6396.76 1.31 AFFX-R2-AT-GAPDH 7074.9 P 11348.4 P 9211.67 1.60 AFFX-R2-AT-UBQ 1562.6 P 12391.8 P 6977.16 7.93 AFFX-ATHAL-ACTIN 201.4 P 494.1 P 7412.8 P 2702.74 36.81 AFFX-ATHAL-GAPDH 2176.4 P 6755.2 P 15989.2 P 8306.97 7.35 AFFX-ATHAL-UBQ 907.4 P 2551.7 P 10910.7 P 4789.91 12.02 ______________________________________________________________________ Spike Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-BIOB 3737.8 P 6068.3 P 5004.5 P 4936.86 1.34 AFFX-BIOC 11412.4 P 6900.3 P 9156.36 0.60 AFFX-BIOD 19426.1 P 31491.2 P 25458.64 1.62 AFFX-CRE 68668.9 P 80920.7 P 74794.80 1.18 AFFX-DAP 26.6 A 3.2 A 6.6 A 12.14 0.25 AFFX-LYS 14.2 A 3.2 A 2.9 A 6.76 0.20 AFFX-PHE 11.4 A 4.0 A 32.9 A 16.11 2.88 AFFX-THR 22.0 A 12.8 A 50.7 A 28.51 2.31 AFFX-TRP 34.0 A 4.5 A 21.2 A 19.92 0.62 AFFX-R2-EC-BIOB 5642.7 P 5922.9 P 5900.3 P 5822.00 1.05 AFFX-R2-EC-BIOC 15193.6 P 16304.6 P 15749.10 1.07 AFFX-R2-EC-BIOD 32431.2 P 39650.3 P 36040.75 1.22 AFFX-R2-P1-CRE 79842.2 P 103081.7 P 91461.94 1.29 AFFX-R2-BS-DAP 2.9 A 15.4 A 4.2 A 7.48 1.43 AFFX-R2-BS-LYS 25.9 A 1.8 A 10.8 A 12.83 0.42 AFFX-R2-BS-PHE 1.2 A 9.6 A 24.2 A 11.69 20.38 AFFX-R2-BS-THR 5.6 A 4.8 A 25.9 A 12.08 4.66 ______________________________________________________________________