Report Type: Expression Report Date: 02:42PM 05/24/2007 ______________________________________________________________________ Filename: Soybean Ovule-Nucelus1.CHP Probe Array Type: Soybean Algorithm: Statistical Probe Pair Thr: 8 Controls: Antisense ______________________________________________________________________ Alpha1: 0.05 Alpha2: 0.065 Tau: 0.015 Noise (RawQ): 2.060 Scale Factor (SF): 14.923 TGT Value: 500 Norm Factor (NF): 1.000 ______________________________________________________________________ Background: Avg: 65.37 Std: 1.11 Min: 63.40 Max: 68.10 Noise: Avg: 3.04 Std: 0.10 Min: 2.80 Max: 3.20 Corner+ Avg: 514 Count: 32 Corner- Avg: 18006 Count: 32 Central- Avg: 19993 Count: 9 ______________________________________________________________________ The following data represents probe sets that exceed the probe pair threshold and are not called "No Call". Total Probe Sets: 61078 Number Present: 14301 23.4% Number Absent: 46076 75.4% Number Marginal: 701 1.1% Average Signal (P): 4238.0 Average Signal (A): 103.0 Average Signal (M): 399.3 Average Signal (All): 1074.6 ______________________________________________________________________ Spike Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-BIOB 5089.2 P 8088.3 P 5671.6 P 6283.03 1.11 AFFX-BIOC 15392.4 P 13036.0 P 14214.22 0.85 AFFX-BIOD 25730.4 P 49244.9 P 37487.63 1.91 AFFX-CRE 142475.4 P 145876.7 P 144176.03 1.02 AFFX-DAP 93.3 A 136.1 A 10.7 A 80.04 0.12 AFFX-LYS 76.5 A 39.3 A 20.2 A 45.37 0.26 AFFX-PHE 18.7 A 10.8 A 30.8 A 20.11 1.65 AFFX-THR 11.8 A 33.0 A 7.7 A 17.50 0.66 AFFX-TRP 81.5 A 15.5 A 88.0 A 61.66 1.08 AFFX-R2-EC-BIOB 7779.7 P 7983.8 P 7799.1 P 7854.23 1.00 AFFX-R2-EC-BIOC 19621.3 P 20612.5 P 20116.87 1.05 AFFX-R2-EC-BIOD 66176.2 P 93856.9 P 80016.57 1.42 AFFX-R2-P1-CRE 158407.0 P 187499.9 P 172953.47 1.18 AFFX-R2-BS-DAP 88.2 A 14.9 A 6.1 A 36.40 0.07 AFFX-R2-BS-LYS 73.5 A 40.5 A 22.4 A 45.48 0.30 AFFX-R2-BS-PHE 4.7 A 138.3 A 91.8 A 78.25 19.75 AFFX-R2-BS-THR 28.2 A 170.9 A 12.5 A 70.54 0.44 ______________________________________________________________________