Report Type: Expression Report Date: 05:20PM 06/04/2008 ______________________________________________________________________ Filename: Arabidopsis pgCZSC2.CHP Probe Array Type: ATH1-121501 Algorithm: Statistical Probe Pair Thr: 8 Controls: Antisense ______________________________________________________________________ Alpha1: 0.05 Alpha2: 0.065 Tau: 0.015 Noise (RawQ): 1.250 Scale Factor (SF): 12.442 TGT Value: 500 Norm Factor (NF): 1.000 ______________________________________________________________________ Background: Avg: 30.66 Std: 0.36 Min: 30.00 Max: 31.90 Noise: Avg: 1.17 Std: 0.05 Min: 1.00 Max: 1.30 Corner+ Avg: 271 Count: 32 Corner- Avg: 21955 Count: 32 Central- Avg: 21095 Count: 9 ______________________________________________________________________ The following data represents probe sets that exceed the probe pair threshold and are not called "No Call". Total Probe Sets: 22810 Number Present: 12469 54.7% Number Absent: 10040 44.0% Number Marginal: 301 1.3% Average Signal (P): 1302.1 Average Signal (A): 40.6 Average Signal (M): 143.6 Average Signal (All): 731.5 ______________________________________________________________________ Housekeeping Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-R2-AT-ACTIN 10657.9 P 1836.6 P 11991.7 P 8162.05 1.13 AFFX-R2-AT-GAPDH 3667.0 P 6079.2 P 4873.07 1.66 AFFX-R2-AT-UBQ 3338.6 P 20566.1 P 11952.34 6.16 AFFX-ATHAL-ACTIN 527.8 P 624.8 P 7212.2 P 2788.26 13.66 AFFX-ATHAL-GAPDH 1192.0 P 3903.8 P 13735.1 P 6276.97 11.52 AFFX-ATHAL-UBQ 1836.4 P 2347.6 P 17823.1 P 7335.72 9.71 ______________________________________________________________________ Spike Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-BIOB 4518.1 P 9371.1 P 9145.7 P 7678.30 2.02 AFFX-BIOC 17336.9 P 11557.4 P 14447.13 0.67 AFFX-BIOD 24525.2 P 50183.8 P 37354.49 2.05 AFFX-CRE 97920.0 P 155040.4 P 126480.20 1.58 AFFX-DAP 32.7 A 13.8 A 15.9 A 20.81 0.48 AFFX-LYS 15.3 A 9.5 A 6.7 A 10.46 0.44 AFFX-PHE 2.6 A 5.4 A 59.4 A 22.45 23.05 AFFX-THR 30.3 A 54.8 P 61.9 A 49.01 2.04 AFFX-TRP 6.2 A 4.7 A 52.7 A 21.20 8.48 AFFX-R2-EC-BIOB 7694.9 P 8944.6 P 9208.5 P 8616.01 1.20 AFFX-R2-EC-BIOC 22122.0 P 20103.9 P 21112.95 0.91 AFFX-R2-EC-BIOD 60136.1 P 72900.3 P 66518.20 1.21 AFFX-R2-P1-CRE 130540.2 P 144637.2 P 137588.66 1.11 AFFX-R2-BS-DAP 48.6 A 2.2 A 2.4 A 17.72 0.05 AFFX-R2-BS-LYS 4.2 A 3.8 A 67.9 A 25.31 16.16 AFFX-R2-BS-PHE 19.6 A 4.9 A 9.6 A 11.39 0.49 AFFX-R2-BS-THR 50.3 A 1.8 A 62.7 A 38.28 1.25 ______________________________________________________________________