Report Type:	Expression Report
Date:          	05:20PM 06/04/2008
______________________________________________________________________

Filename:		Arabidopsis pgEP2.CHP
Probe Array Type:	ATH1-121501
Algorithm:		Statistical
Probe Pair Thr:	8
Controls:		Antisense
______________________________________________________________________

Alpha1:		0.05
Alpha2:		0.065
Tau:		0.015
Noise (RawQ):	1.150
Scale Factor (SF):	16.473
TGT Value:		500
Norm Factor (NF):	1.000
______________________________________________________________________

Background:
	Avg: 29.57	Std: 0.37	Min: 28.90	Max: 30.70
Noise:
	Avg: 1.04	Std: 0.04	Min: 1.00	Max: 1.20
Corner+
	Avg: 229		Count: 32
Corner-
	Avg: 17187		Count: 32
Central-
	Avg: 13281		Count: 9
______________________________________________________________________

The following data represents probe sets that exceed the probe pair threshold 
and are not called "No Call".

Total Probe Sets:	22810
Number Present:	11132	48.8%
Number Absent:	11311	49.6%
Number Marginal:	367	1.6%

Average Signal (P):	1681.3
Average Signal (A):	51.9
Average Signal (M):	170.1
Average Signal (All):	849.0
______________________________________________________________________

Housekeeping Controls:
Probe Set		Sig(5')	Det(5')	Sig(M')	Det(M')	Sig(3')	Det(3')	Sig(all)	Sig(3'/5')
AFFX-R2-AT-ACTIN	9791.1	P	1794.1	P	12169.9	P	7918.36	1.24
AFFX-R2-AT-GAPDH	3305.6	P	 	 	5187.0	P	4246.29	1.57
AFFX-R2-AT-UBQ	1759.8	P	 	 	9474.1	P	5616.95	5.38
AFFX-ATHAL-ACTIN	561.8	P	1014.5	P	6987.1	P	2854.48	12.44
AFFX-ATHAL-GAPDH	1333.7	P	3624.1	P	10203.7	P	5053.82	7.65
AFFX-ATHAL-UBQ	633.2	P	1928.3	P	7734.1	P	3431.86	12.22
______________________________________________________________________

Spike Controls:
Probe Set		Sig(5')	Det(5')	Sig(M')	Det(M')	Sig(3')	Det(3')	Sig(all)	Sig(3'/5')
AFFX-BIOB		7830.9	P	15799.0	P	12154.4	P	11928.11	1.55
AFFX-BIOC		28015.2	P	 	 	16626.9	P	22321.06	0.59
AFFX-BIOD		36581.0	P	 	 	76213.1	P	56397.02	2.08
AFFX-CRE		136914.5	P	 	 	187769.0	P	162341.75	1.37
AFFX-DAP		63.9	A	65.2	A	9.0	A	46.06	0.14
AFFX-LYS		52.4	A	6.4	A	64.0	A	40.93	1.22
AFFX-PHE		13.6	A	5.6	A	15.7	A	11.62	1.15
AFFX-THR		59.3	A	20.7	A	109.7	M	63.23	1.85
AFFX-TRP		122.8	P	6.3	A	6.3	A	45.12	0.05
AFFX-R2-EC-BIOB	11547.8	P	11794.2	P	11829.7	P	11723.91	1.02
AFFX-R2-EC-BIOC	33360.3	P	 	 	36147.6	P	34753.95	1.08
AFFX-R2-EC-BIOD	71707.3	P	 	 	81934.0	P	76820.63	1.14
AFFX-R2-P1-CRE	157361.7	P	 	 	193610.5	P	175486.09	1.23
AFFX-R2-BS-DAP	3.7	A	8.1	A	56.8	A	22.88	15.51
AFFX-R2-BS-LYS	38.6	A	3.4	A	81.3	A	41.13	2.10
AFFX-R2-BS-PHE	6.9	A	20.1	A	10.5	A	12.50	1.52
AFFX-R2-BS-THR	81.8	A	67.5	A	9.3	A	52.85	0.11
______________________________________________________________________