Report Type: Expression Report Date: 07:11PM 11/25/2008 ______________________________________________________________________ Filename: Arabidopsis mgCZE-2_2.CHP Probe Array Type: ATH1-121501 Algorithm: Statistical Probe Pair Thr: 8 Controls: Antisense ______________________________________________________________________ Alpha1: 0.05 Alpha2: 0.065 Tau: 0.015 Noise (RawQ): 1.500 Scale Factor (SF): 18.186 TGT Value: 500 Norm Factor (NF): 1.000 ______________________________________________________________________ Background: Avg: 34.46 Std: 0.70 Min: 33.40 Max: 37.50 Noise: Avg: 1.33 Std: 0.11 Min: 1.20 Max: 1.80 Corner+ Avg: 138 Count: 32 Corner- Avg: 22321 Count: 32 Central- Avg: 20738 Count: 9 ______________________________________________________________________ The following data represents probe sets that exceed the probe pair threshold and are not called "No Call". Total Probe Sets: 22810 Number Present: 10637 46.6% Number Absent: 11828 51.9% Number Marginal: 345 1.5% Average Signal (P): 1682.0 Average Signal (A): 65.5 Average Signal (M): 214.9 Average Signal (All): 821.6 ______________________________________________________________________ Housekeeping Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-R2-AT-ACTIN 10653.9 P 1842.6 P 7375.2 P 6623.89 0.69 AFFX-R2-AT-GAPDH 5813.2 P 6955.4 P 6384.29 1.20 AFFX-R2-AT-UBQ 3800.8 P 15589.1 P 9694.95 4.10 AFFX-ATHAL-ACTIN 530.6 P 975.3 P 5320.1 P 2275.35 10.03 AFFX-ATHAL-GAPDH 2121.0 P 5873.7 P 14466.9 P 7487.21 6.82 AFFX-ATHAL-UBQ 2939.4 P 3668.0 P 21333.0 P 9313.49 7.26 ______________________________________________________________________ Spike Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-BIOB 9378.9 P 19532.7 P 13628.4 P 14180.00 1.45 AFFX-BIOC 29439.7 P 16754.1 P 23096.93 0.57 AFFX-BIOD 35771.9 P 89911.8 P 62841.85 2.51 AFFX-CRE 215914.3 P 273589.2 P 244751.75 1.27 AFFX-DAP 125.4 A 16.2 A 40.6 A 60.70 0.32 AFFX-LYS 50.6 A 7.8 A 28.9 A 29.10 0.57 AFFX-PHE 56.4 A 14.8 A 18.4 A 29.83 0.33 AFFX-THR 34.3 A 44.9 A 20.2 A 33.12 0.59 AFFX-TRP 11.7 A 24.6 A 119.6 A 51.99 10.19 AFFX-R2-EC-BIOB 11350.0 P 13348.0 P 11791.9 P 12163.30 1.04 AFFX-R2-EC-BIOC 29524.8 P 31146.0 P 30335.37 1.05 AFFX-R2-EC-BIOD 73878.6 P 88579.7 P 81229.16 1.20 AFFX-R2-P1-CRE 229975.2 P 211019.0 P 220497.09 0.92 AFFX-R2-BS-DAP 58.7 A 9.8 A 12.1 A 26.88 0.21 AFFX-R2-BS-LYS 10.4 A 9.1 A 7.8 A 9.11 0.75 AFFX-R2-BS-PHE 19.5 A 110.4 A 91.1 A 73.69 4.67 AFFX-R2-BS-THR 81.9 A 7.1 A 54.7 A 47.89 0.67 ______________________________________________________________________