Report Type: Expression Report Date: 07:11PM 11/25/2008 ______________________________________________________________________ Filename: Arabidopsis mgCZSC-3.CHP Probe Array Type: ATH1-121501 Algorithm: Statistical Probe Pair Thr: 8 Controls: Antisense ______________________________________________________________________ Alpha1: 0.05 Alpha2: 0.065 Tau: 0.015 Noise (RawQ): 1.600 Scale Factor (SF): 12.638 TGT Value: 500 Norm Factor (NF): 1.000 ______________________________________________________________________ Background: Avg: 34.77 Std: 0.73 Min: 33.20 Max: 38.30 Noise: Avg: 1.52 Std: 0.14 Min: 1.30 Max: 2.20 Corner+ Avg: 194 Count: 32 Corner- Avg: 39229 Count: 32 Central- Avg: 39578 Count: 9 ______________________________________________________________________ The following data represents probe sets that exceed the probe pair threshold and are not called "No Call". Total Probe Sets: 22810 Number Present: 11905 52.2% Number Absent: 10569 46.3% Number Marginal: 336 1.5% Average Signal (P): 1420.0 Average Signal (A): 61.2 Average Signal (M): 191.4 Average Signal (All): 772.3 ______________________________________________________________________ Housekeeping Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-R2-AT-ACTIN 19864.9 P 1742.8 P 5980.8 P 9196.18 0.30 AFFX-R2-AT-GAPDH 5884.9 P 8238.5 P 7061.71 1.40 AFFX-R2-AT-UBQ 6677.8 P 23680.5 P 15179.15 3.55 AFFX-ATHAL-ACTIN 1118.8 P 1064.5 P 6139.0 P 2774.12 5.49 AFFX-ATHAL-GAPDH 3753.4 P 4366.5 P 13234.0 P 7117.97 3.53 AFFX-ATHAL-UBQ 3939.5 P 6130.4 P 23865.0 P 11311.63 6.06 ______________________________________________________________________ Spike Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-BIOB 8909.1 P 15691.8 P 13184.3 P 12595.07 1.48 AFFX-BIOC 28974.6 P 17463.9 P 23219.24 0.60 AFFX-BIOD 35017.3 P 75811.4 P 55414.33 2.16 AFFX-CRE 199769.8 P 220043.0 P 209906.41 1.10 AFFX-DAP 83.5 A 16.7 A 39.6 A 46.58 0.47 AFFX-LYS 22.9 A 130.9 A 18.4 A 57.40 0.80 AFFX-PHE 35.3 A 4.1 A 26.3 A 21.88 0.75 AFFX-THR 41.2 A 7.3 A 123.8 A 57.44 3.00 AFFX-TRP 119.3 A 51.4 A 14.3 A 61.65 0.12 AFFX-R2-EC-BIOB 12168.8 P 13220.3 P 13401.2 P 12930.09 1.10 AFFX-R2-EC-BIOC 29801.6 P 33925.7 P 31863.67 1.14 AFFX-R2-EC-BIOD 79087.2 P 99231.8 P 89159.52 1.25 AFFX-R2-P1-CRE 195817.4 P 235283.4 P 215550.41 1.20 AFFX-R2-BS-DAP 10.1 A 68.9 P 3.1 A 27.41 0.31 AFFX-R2-BS-LYS 25.5 A 8.4 A 15.0 A 16.29 0.59 AFFX-R2-BS-PHE 109.5 A 4.2 A 26.8 A 46.82 0.24 AFFX-R2-BS-THR 81.2 A 17.0 A 38.1 A 45.44 0.47 ______________________________________________________________________