Report Type: Expression Report Date: 12:43PM 11/08/2008 ______________________________________________________________________ Filename: Arabidopsis hMCE3.CHP Probe Array Type: ATH1-121501 Algorithm: Statistical Probe Pair Thr: 8 Controls: Antisense ______________________________________________________________________ Alpha1: 0.05 Alpha2: 0.065 Tau: 0.015 Noise (RawQ): 1.080 Scale Factor (SF): 14.471 TGT Value: 500 Norm Factor (NF): 1.000 ______________________________________________________________________ Background: Avg: 30.74 Std: 0.53 Min: 30.10 Max: 33.20 Noise: Avg: 0.95 Std: 0.08 Min: 0.80 Max: 1.30 Corner+ Avg: 60 Count: 32 Corner- Avg: 9963 Count: 32 Central- Avg: 7842 Count: 9 ______________________________________________________________________ The following data represents probe sets that exceed the probe pair threshold and are not called "No Call". Total Probe Sets: 22810 Number Present: 12343 54.1% Number Absent: 10204 44.7% Number Marginal: 263 1.2% Average Signal (P): 1317.8 Average Signal (A): 38.8 Average Signal (M): 129.6 Average Signal (All): 732.0 ______________________________________________________________________ Housekeeping Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-R2-AT-ACTIN 6285.3 P 2646.4 P 13481.2 P 7470.95 2.14 AFFX-R2-AT-GAPDH 3517.7 P 8216.3 P 5866.98 2.34 AFFX-R2-AT-UBQ 2822.2 P 19457.5 P 11139.81 6.89 AFFX-ATHAL-ACTIN 282.9 P 1755.2 P 8163.1 P 3400.41 28.86 AFFX-ATHAL-GAPDH 1085.2 P 4322.9 P 12682.9 P 6030.30 11.69 AFFX-ATHAL-UBQ 1964.8 P 3305.4 P 16833.1 P 7367.77 8.57 ______________________________________________________________________ Spike Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-BIOB 3824.6 P 8161.0 P 6003.3 P 5996.29 1.57 AFFX-BIOC 15232.2 P 8145.9 P 11689.03 0.53 AFFX-BIOD 18641.6 P 38028.5 P 28335.02 2.04 AFFX-CRE 77320.0 P 107858.6 P 92589.28 1.39 AFFX-DAP 54.2 A 22.4 A 15.7 A 30.73 0.29 AFFX-LYS 5.9 A 6.4 A 4.1 A 5.46 0.69 AFFX-PHE 18.6 A 3.1 A 8.9 A 10.20 0.48 AFFX-THR 36.3 A 16.6 A 87.4 P 46.78 2.41 AFFX-TRP 19.4 A 33.9 A 56.8 A 36.71 2.92 AFFX-R2-EC-BIOB 4986.1 P 6240.1 P 6676.9 P 5967.71 1.34 AFFX-R2-EC-BIOC 15973.3 P 14611.2 P 15292.25 0.91 AFFX-R2-EC-BIOD 31569.9 P 43531.8 P 37550.82 1.38 AFFX-R2-P1-CRE 92580.8 P 90449.1 P 91514.95 0.98 AFFX-R2-BS-DAP 1.6 A 10.9 A 3.6 A 5.36 2.25 AFFX-R2-BS-LYS 2.0 A 4.4 A 29.8 A 12.06 15.23 AFFX-R2-BS-PHE 6.9 A 3.1 A 11.9 A 7.32 1.72 AFFX-R2-BS-THR 2.8 A 8.9 A 72.6 A 28.09 25.67 ______________________________________________________________________