Report Type: Expression Report Date: 12:44PM 11/08/2008 ______________________________________________________________________ Filename: Arabidopsis hPEN3.CHP Probe Array Type: ATH1-121501 Algorithm: Statistical Probe Pair Thr: 8 Controls: Antisense ______________________________________________________________________ Alpha1: 0.05 Alpha2: 0.065 Tau: 0.015 Noise (RawQ): 1.090 Scale Factor (SF): 14.958 TGT Value: 500 Norm Factor (NF): 1.000 ______________________________________________________________________ Background: Avg: 31.99 Std: 0.38 Min: 31.50 Max: 34.00 Noise: Avg: 0.96 Std: 0.05 Min: 0.90 Max: 1.20 Corner+ Avg: 64 Count: 32 Corner- Avg: 10225 Count: 32 Central- Avg: 8358 Count: 9 ______________________________________________________________________ The following data represents probe sets that exceed the probe pair threshold and are not called "No Call". Total Probe Sets: 22810 Number Present: 11811 51.8% Number Absent: 10720 47.0% Number Marginal: 279 1.2% Average Signal (P): 1422.1 Average Signal (A): 38.9 Average Signal (M): 130.7 Average Signal (All): 756.3 ______________________________________________________________________ Housekeeping Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-R2-AT-ACTIN 6293.7 P 3231.0 P 13473.1 P 7665.94 2.14 AFFX-R2-AT-GAPDH 4763.7 P 10710.0 P 7736.82 2.25 AFFX-R2-AT-UBQ 1816.3 P 15051.6 P 8433.96 8.29 AFFX-ATHAL-ACTIN 385.5 P 1622.5 P 7551.9 P 3186.62 19.59 AFFX-ATHAL-GAPDH 1690.0 P 5792.6 P 13218.8 P 6900.47 7.82 AFFX-ATHAL-UBQ 1445.9 P 2682.3 P 12822.9 P 5650.35 8.87 ______________________________________________________________________ Spike Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-BIOB 4895.9 P 9732.4 P 6890.3 P 7172.88 1.41 AFFX-BIOC 17589.1 P 9850.6 P 13719.87 0.56 AFFX-BIOD 22114.2 P 42932.3 P 32523.25 1.94 AFFX-CRE 86273.0 P 117438.5 P 101855.72 1.36 AFFX-DAP 11.9 A 10.1 A 42.7 A 21.58 3.58 AFFX-LYS 39.3 A 6.3 A 8.3 A 17.97 0.21 AFFX-PHE 7.2 A 26.5 A 9.5 A 14.38 1.31 AFFX-THR 6.5 A 7.5 A 80.4 A 31.47 12.38 AFFX-TRP 52.9 A 3.7 A 6.5 A 21.02 0.12 AFFX-R2-EC-BIOB 7517.9 P 7641.8 P 7046.9 P 7402.20 0.94 AFFX-R2-EC-BIOC 18197.2 P 19591.0 P 18894.10 1.08 AFFX-R2-EC-BIOD 44131.4 P 43150.5 P 43640.96 0.98 AFFX-R2-P1-CRE 106773.0 P 126865.6 P 116819.31 1.19 AFFX-R2-BS-DAP 2.9 A 4.5 A 14.8 A 7.35 5.17 AFFX-R2-BS-LYS 2.1 A 58.4 A 7.2 A 22.60 3.39 AFFX-R2-BS-PHE 4.8 A 2.6 A 9.8 A 5.75 2.03 AFFX-R2-BS-THR 33.8 A 17.2 A 63.3 A 38.09 1.87 ______________________________________________________________________