Report Type: Expression Report Date: 12:44PM 11/08/2008 ______________________________________________________________________ Filename: Arabidopsis hPEN4.CHP Probe Array Type: ATH1-121501 Algorithm: Statistical Probe Pair Thr: 8 Controls: Antisense ______________________________________________________________________ Alpha1: 0.05 Alpha2: 0.065 Tau: 0.015 Noise (RawQ): 1.100 Scale Factor (SF): 14.563 TGT Value: 500 Norm Factor (NF): 1.000 ______________________________________________________________________ Background: Avg: 31.12 Std: 0.21 Min: 30.80 Max: 31.90 Noise: Avg: 0.94 Std: 0.02 Min: 0.90 Max: 1.00 Corner+ Avg: 54 Count: 32 Corner- Avg: 11115 Count: 32 Central- Avg: 8516 Count: 9 ______________________________________________________________________ The following data represents probe sets that exceed the probe pair threshold and are not called "No Call". Total Probe Sets: 22810 Number Present: 11542 50.6% Number Absent: 10975 48.1% Number Marginal: 293 1.3% Average Signal (P): 1478.8 Average Signal (A): 37.7 Average Signal (M): 138.0 Average Signal (All): 768.2 ______________________________________________________________________ Housekeeping Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-R2-AT-ACTIN 6147.5 P 2922.0 P 13068.6 P 7379.34 2.13 AFFX-R2-AT-GAPDH 6111.2 P 8694.1 P 7402.65 1.42 AFFX-R2-AT-UBQ 1942.3 P 13613.4 P 7777.88 7.01 AFFX-ATHAL-ACTIN 324.5 P 1489.9 P 6771.2 P 2861.87 20.86 AFFX-ATHAL-GAPDH 1628.3 P 6389.1 P 14443.5 P 7486.97 8.87 AFFX-ATHAL-UBQ 1508.6 P 3148.5 P 11760.6 P 5472.55 7.80 ______________________________________________________________________ Spike Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-BIOB 4080.0 P 6716.8 P 6239.6 P 5678.81 1.53 AFFX-BIOC 12488.3 P 7290.4 P 9889.34 0.58 AFFX-BIOD 14676.3 P 32402.4 P 23539.34 2.21 AFFX-CRE 66485.8 P 95352.7 P 80919.25 1.43 AFFX-DAP 86.8 A 7.0 A 23.1 A 38.98 0.27 AFFX-LYS 45.7 A 6.5 A 4.1 A 18.77 0.09 AFFX-PHE 60.0 A 36.8 A 6.5 A 34.44 0.11 AFFX-THR 4.2 A 65.1 A 98.8 A 56.04 23.25 AFFX-TRP 19.4 A 31.2 A 52.3 A 34.29 2.70 AFFX-R2-EC-BIOB 8388.1 P 9139.4 P 9151.3 P 8892.93 1.09 AFFX-R2-EC-BIOC 20346.6 P 19548.7 P 19947.68 0.96 AFFX-R2-EC-BIOD 46768.0 P 59273.3 P 53020.64 1.27 AFFX-R2-P1-CRE 115509.3 P 126480.1 P 120994.70 1.09 AFFX-R2-BS-DAP 2.9 A 6.3 A 59.0 A 22.72 20.26 AFFX-R2-BS-LYS 2.6 A 1.8 A 30.7 A 11.73 11.62 AFFX-R2-BS-PHE 38.5 A 28.5 A 10.2 A 25.72 0.26 AFFX-R2-BS-THR 47.0 A 37.0 A 59.1 A 47.70 1.26 ______________________________________________________________________