Report Type: Expression Report Date: 01:27PM 10/30/2008 ______________________________________________________________________ Filename: Arabidopsis hWS4.CHP Probe Array Type: ATH1-121501 Algorithm: Statistical Probe Pair Thr: 8 Controls: Antisense ______________________________________________________________________ Alpha1: 0.05 Alpha2: 0.065 Tau: 0.015 Noise (RawQ): 1.030 Scale Factor (SF): 28.026 TGT Value: 500 Norm Factor (NF): 1.000 ______________________________________________________________________ Background: Avg: 29.83 Std: 0.29 Min: 29.30 Max: 30.60 Noise: Avg: 0.81 Std: 0.04 Min: 0.70 Max: 0.90 Corner+ Avg: 82 Count: 32 Corner- Avg: 11478 Count: 32 Central- Avg: 11415 Count: 9 ______________________________________________________________________ The following data represents probe sets that exceed the probe pair threshold and are not called "No Call". Total Probe Sets: 22810 Number Present: 11860 52.0% Number Absent: 10598 46.5% Number Marginal: 352 1.5% Average Signal (P): 1429.8 Average Signal (A): 60.6 Average Signal (M): 191.8 Average Signal (All): 774.6 ______________________________________________________________________ Housekeeping Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-R2-AT-ACTIN 12088.5 P 1755.7 P 9157.4 P 7667.22 0.76 AFFX-R2-AT-GAPDH 3292.4 P 6555.0 P 4923.70 1.99 AFFX-R2-AT-UBQ 3322.4 P 20557.9 P 11940.15 6.19 AFFX-ATHAL-ACTIN 465.1 P 632.1 P 7562.5 P 2886.57 16.26 AFFX-ATHAL-GAPDH 1221.5 P 4865.4 P 11195.0 P 5760.64 9.17 AFFX-ATHAL-UBQ 2403.2 P 5261.3 P 20715.3 P 9459.95 8.62 ______________________________________________________________________ Spike Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-BIOB 7235.4 P 13079.7 P 10825.3 P 10380.13 1.50 AFFX-BIOC 25536.4 P 13621.4 P 19578.87 0.53 AFFX-BIOD 31381.5 P 70507.5 P 50944.50 2.25 AFFX-CRE 145639.2 P 220262.5 P 182950.86 1.51 AFFX-DAP 67.7 A 4.1 A 6.1 A 25.97 0.09 AFFX-LYS 5.7 A 31.3 A 4.7 A 13.88 0.83 AFFX-PHE 4.9 A 10.1 A 23.0 A 12.63 4.74 AFFX-THR 11.2 A 8.1 A 69.2 A 29.51 6.15 AFFX-TRP 60.6 A 4.0 A 68.8 A 44.47 1.13 AFFX-R2-EC-BIOB 11125.6 P 11121.8 P 11131.1 P 11126.13 1.00 AFFX-R2-EC-BIOC 30055.1 P 31060.0 P 30557.52 1.03 AFFX-R2-EC-BIOD 72492.9 P 93351.8 P 82922.39 1.29 AFFX-R2-P1-CRE 200435.2 P 233164.5 P 216799.81 1.16 AFFX-R2-BS-DAP 57.7 A 10.9 A 80.6 A 49.73 1.40 AFFX-R2-BS-LYS 3.6 A 3.4 A 101.4 A 36.14 28.40 AFFX-R2-BS-PHE 67.7 A 3.4 A 40.0 A 37.03 0.59 AFFX-R2-BS-THR 3.7 A 25.1 A 86.4 A 38.43 23.05 ______________________________________________________________________