Report Type: Expression Report Date: 11:48AM 09/07/2006 ______________________________________________________________________ Filename: Soybean EP1_10ng.CHP Probe Array Type: Soybean Algorithm: Statistical Probe Pair Thr: 8 Controls: Antisense ______________________________________________________________________ Alpha1: 0.05 Alpha2: 0.065 Tau: 0.015 Noise (RawQ): 1.970 Scale Factor (SF): 4.899 TGT Value: 500 Norm Factor (NF): 1.000 ______________________________________________________________________ Background: Avg: 61.96 Std: 1.15 Min: 59.20 Max: 64.90 Noise: Avg: 2.89 Std: 0.07 Min: 2.60 Max: 3.10 Corner+ Avg: 463 Count: 32 Corner- Avg: 15118 Count: 32 Central- Avg: 14873 Count: 9 ______________________________________________________________________ The following data represents probe sets that exceed the probe pair threshold and are not called "No Call". Total Probe Sets: 61078 Number Present: 18674 30.6% Number Absent: 41743 68.3% Number Marginal: 661 1.1% Average Signal (P): 2863.8 Average Signal (A): 39.9 Average Signal (M): 166.0 Average Signal (All): 904.6 ______________________________________________________________________ Spike Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-BIOB 1304.5 P 2198.7 P 1475.2 P 1659.47 1.13 AFFX-BIOC 4985.4 P 3944.1 P 4464.72 0.79 AFFX-BIOD 7962.0 P 13606.5 P 10784.24 1.71 AFFX-CRE 40695.4 P 44361.4 P 42528.38 1.09 AFFX-DAP 61.1 A 9.0 A 2.3 A 24.16 0.04 AFFX-LYS 5.3 A 6.7 A 3.4 A 5.13 0.65 AFFX-PHE 3.1 A 8.9 A 18.0 A 9.99 5.84 AFFX-THR 5.0 A 6.4 A 9.7 A 7.04 1.92 AFFX-TRP 8.5 A 33.7 A 4.5 A 15.57 0.54 AFFX-R2-EC-BIOB 2208.8 P 2009.8 P 2050.8 P 2089.81 0.93 AFFX-R2-EC-BIOC 5416.6 P 4894.2 P 5155.41 0.90 AFFX-R2-EC-BIOD 19509.5 P 22748.8 P 21129.14 1.17 AFFX-R2-P1-CRE 43450.3 P 57228.2 P 50339.25 1.32 AFFX-R2-BS-DAP 2.5 A 4.1 A 6.3 A 4.29 2.52 AFFX-R2-BS-LYS 1.9 A 6.6 A 44.5 A 17.66 23.91 AFFX-R2-BS-PHE 3.4 A 27.5 A 55.0 A 28.63 16.15 AFFX-R2-BS-THR 49.5 A 48.6 A 43.3 A 47.14 0.87 ______________________________________________________________________